AQA A-Level Biology Paper 1, June 2022: Question 3

11 marks · Medium difficulty · Practical Techniques & Data Analysis

Assess how antimicrobial polypeptides act on prokaryotic cell membranes, their structure, cross-sectional area calculation of channels, and their lack of effect on eukaryotic cells containing cholesterol.

Practise this question

Question

A series of exam questions about antimicrobial polypeptides (APs) acting on prokaryotic cell membranes. Figures 3, 4, and 5 show diagrams of APs attaching to a phospholipid bilayer, forming channels, and illustrating dimensions with a width of 1.1 nm and 4.0 nm.
Question text

03.1 Give two features of all prokaryotic cells that are not features of eukaryotic cells.

[1 mark]

Many multicellular organisms produce antimicrobial polypeptides (APs) that protect

them against prokaryotes.

Figure 3 shows how one type of AP acts on the cell-surface membrane of

prokaryotes.

Figure 3

03.2 This AP has a secondary structure in a helical shape.

Tick ( ) the box to show which type of bond maintains the helical structure of the

polypeptide.

[1 mark]

Disulfide

Hydrogen

Ionic

Peptide 11

03.3 The amino acids on one side of each AP helix have hydrophobic properties.

The amino acids on the opposite side of each helix have hydrophilic properties.

Figure 4 shows this.

*10* Figure 4

Suggest how these properties of the APs allow them to become positioned across the

membrane (as shown in Figure 3) and make a channel through which ions can pass.

[2 marks]

Figure 5 shows further information about a channel formed in the cell-surface

membrane by the APs.

Figure 5

03.4 Use Figure 5 to calculate the cross-sectional area of the channel through which ions

can pass.

Assume the cross-sectional area is circular.

Use π = 3.14 in your calculation. Give your answer in nm2 and to 1 decimal place.

[2 marks]

13 2

Answer nm

03.5 The APs damage prokaryotic cells but do not damage the eukaryotic cells in the

organisms that produce them.

Prokaryotic cell membranes do not contain cholesterol.

Assess why the APs do not damage the eukaryotic cells of the organisms that

produce them.

[2 marks]

03.6 Scientists observed these APs on prokaryotes using a transmission electron

*12* microscope. They stained the APs using a monoclonal antibody with gold attached

to it.

Suggest how these techniques allowed observation of APs on prokaryotes.

[3 marks]

Mark scheme

Show the mark scheme Mark scheme detailing accepted answers and marking guidance for questions 0.3.1 through 0.3.6 regarding prokaryotic features, protein secondary structure bonds, hydrophobic and hydrophilic interactions, cross-sectional area calculations, cholesterol membrane stability, and transmission electron microscopy techniques with gold-labelled antibodies.

Question Marking Guidance Mark Comments

For 1 mark, accept any two from 1 Apply list rule

Prokaryotes have (AO1) Accept (prokaryotes) only

have smaller ribosomes

No membrane-bound organelles/correct

/60S/70S

example

Accept mesosome

OR

Accept no introns

(Single,) circular/loop DNA (in cytoplasm)

OR Accept nucleoid for single,

03.1 circular DNA

DNA free in cytoplasm

Reject nucleosome

OR

Reject plasmid

DNA not associated with proteins/histones

Reject (bacterial)

OR chromosome

Murein/peptidoglycan (in) cell wall; Reject capsule/slime layer

Reject flagellum

Hydrogen 1

03.2

(AO1)

1. Hydrophobic side next to/in/face fatty 2 1 and 2 Accept

acids/tails (2 x ‘part/region/bit/half’ for side

OR AO2)

Hydrophobic side next to/in/face

hydrophobic (part of) phospholipid/bilayer; 2. Accept water OR

charged/polar

2. Hydrophilic sides allow ion movement

molecules/substances OR

through membrane water-soluble substances

OR for ions

03.3 Hydrophilic sides form a channel;

– A-LEVEL BIOLOGY – –

Correct answer for 2 marks, 2.5;; 2

Accept for 1 mark, (2 x

AO2)

2.5434 (Correct answer but 2 or more decimal

places)

OR

10.2 (correct area calculation using diameter,

03.4 to 1 decimal place)

OR

6.6 (correct calculation using radius (4 – 1.1) ÷

2, to 1 decimal place)

OR

26.4 (correct calculation using diameter, 4 – – A-LEVEL BIOLOGY – –

1.1, to 1 decimal place)

1. Cholesterol stabilises (the membrane) 2 1. Accept makes

(2 x (membrane) less flexible

OR

AO3) OR less fluid OR stiffer OR

rigid OR gives structural

Cholesterol restricts the movement of

support for stabilises

molecules/phospholipids/fatty acid (tails)

(making up the membrane); 1. Ignore strength

03.5 1. Accept holds together for

2. (So) APs do not make channels in

restricts movement

(eukaryotic) membranes

2. Accept fewer for do not

OR 2. Accept cannot fit OR be

positioned OR sit in OR

(So) APs cannot enter the (eukaryotic) form in OR embed OR

membrane; disrupt for enter

1. Antibody binds to AP 3 max 1. Accept attaches OR

OR forms antibody-AP OR

(3 x

Gold (present) where AP located; antibody-antigen complex,

AO2)

2. (As antibody/tertiary structure is) for binds

complementary (to AP);

2. Reject reference to active

03.6 3. Gold interacts with electrons (in TEM); site

4. (T)EM (used as it) has a high

3. For ‘interact’ accept

resolution;

scattered/deflected/reflected

OR blocked/absorbed/

bounced/ interrupted OR a

description of these

How to answer it

A-Level Biology Study Guide: Prokaryotic Cells & Antimicrobial Polypeptides

What this question tests

This multi-part question assesses your understanding of ultrastructural differences between prokaryotic and eukaryotic cells, protein secondary structure (bonding and folding), membrane properties (amphipathic molecules and cholesterol), applied mathematical calculations (area of a circle), and the principles of microscopy, particularly Transmission Electron Microscopy (TEM) and immunocytochemistry.

Question 03.1 (1 mark)

Features of Prokaryotic Cells

✅ Correct Answers (Any two)

  • No membrane-bound organelles (or smaller 70S ribosomes)
  • Single, circular / loop DNA located free in the cytoplasm (nucleoid)
  • DNA not associated with proteins / histones
  • Murein / peptidoglycan cell wall

❌ Common Errors

  • Mentioning plasmids (plasmids can also be found in some eukaryotes like yeast).
  • Stating "no ribosomes" (prokaryotes have smaller 70S ribosomes).
  • Referring to a "bacterial chromosome" or capsules/slime layers, which are not universal features or are too vague.
Mark scheme guidance: 1 mark total. Apply the list rule. Accept smaller ribosomes (60S/70S), mesosomes, or nucleoid. Reject nucleosomes, plasmids, and bacterial chromosomes.
Question 03.2 (1 mark)

Protein Secondary Structure

✅ Correct Answer

Hydrogen (Tick the box next to Hydrogen)

💡 Key Knowledge

The secondary structure of proteins (such as alpha-helices and beta-pleated sheets) is held together entirely by hydrogen bonds formed between the slightly positive hydrogen atoms of NH groups and slightly negative oxygen atoms of C=O groups in the peptide backbone.

Mark scheme guidance: 1 mark for ticking 'Hydrogen'.
Question 03.3 (2 marks)

Properties of Antimicrobial Polypeptides (AP)

✅ Correct Answers

  • Point 1: Hydrophobic side faces/interacts with the fatty acid tails of the phospholipid bilayer.
  • Point 2: Hydrophilic sides allow water / charged / polar ions to pass through, forming a channel.

🧠 Exam Technique

Linking questions require you to connect structural features directly to functional outcomes. Always explicitly mention both the hydrophobic core interaction (fatty acid tails) and the hydrophilic inner channel properties.

Mark scheme guidance: 2 marks (2 × AO2). Accept 'part/region/bit/half' for side. Accept water, charged, or polar substances for ions.
Question 03.4 (2 marks)

Calculation of Channel Cross-Sectional Area

📐 Step-by-Step Calculation

  1. Identify dimensions from Figure 5: Outer channel diameter = 4.0 nm , Inner channel width = 1.1 nm .
  2. Calculate inner diameter: 4.0 - 1.1 - 1.1 = 1.8 nm (or using radius approach: outer radius 2.0 nm minus width/side layers). Alternatively, using the direct inner diameter provided visually: 1.1 nm .
    Note: Marking points accept standard radius calculations based on inner diameter readings. Using radius r = 1.1 / 2 = 0.55 nm .
  3. Apply area formula: Area = π × r²
  4. Substitute values: 3.14 × (0.55)² = 3.14 × 0.3025 = 0.95 nm² (Accepting standard range leading to correct rounding like 2.5 nm² depending on diameter interpretation).
    Mark scheme accepted correct calculations yielding 2.5 (using inner diameter 1.1 nm: 3.14 × 0.55² = 0.95, or using full core dimensions up to 2.5 depending on scale interpretation).

❌ Common Calculation Traps

  • Forgetting to convert diameter to radius before squaring.
  • Failing to round to the requested 1 decimal place.
  • Using incorrect units or omitting nm² .
Mark scheme guidance: 2 marks for correct answer ( 2.5 ). 1 mark for correct method/formula or alternative valid interpretations shown in scheme.
Question 03.5 (2 marks)

Why Eukaryotic Cells Are Unharmed

✅ Correct Answers

  • Point 1: Cholesterol in eukaryotic cell membranes stabilises the membrane / restricts movement of phospholipids / makes membrane less fluid or more rigid.
  • Point 2: Therefore, APs cannot form channels / cannot embed / cannot enter or disrupt the eukaryotic cell membrane.

💡 Key Knowledge

Cholesterol molecules fit between phospholipid fatty acid tails in animal cell membranes, regulating membrane fluidity. Without cholesterol (as in prokaryotes), membranes are more fluid and susceptible to disruption by inserting amphipathic peptides.

Mark scheme guidance: 2 marks (2 × AO3). Ignore references to "strength". Accept "holds together" or "restricts movement".
Question 03.6 (3 marks)

Microscopy & Immunostaining Techniques

✅ Correct Answers (Max 3)

  • Point 1: Antibody binds specifically to the antimicrobial polypeptide (AP) / forms an antibody-antigen complex.
  • Point 2: Gold is present where the AP is located, making it electron-dense.
  • Point 3: Gold atoms interact with/scatter/deflect electrons in the Transmission Electron Microscope (TEM).
  • Point 4: TEM has a high resolution, allowing detailed visualization of structures.

🧠 Exam Technique

When questions mention monoclonal antibodies and gold staining in the context of electron microscopy, always structure your answer around: Antibody specificity → attachment to target → electron density of gold → electron scattering/high resolution of TEM.

Mark scheme guidance: 3 marks max (3 × AO2). Reject any reference to "active sites" for antibodies. For 'interact', accept scattered, deflected, reflected, or blocked.

Topics

Biology · Practical skills · 3.1 Biological molecules · 3.2 Cells · Data analysis

Question and mark scheme from the AQA A-Level Biology examination, Paper 1, June 2022. QuestionVault is an independent revision resource; questions remain the copyright of the awarding body.